RECODE
Contents:
Tutorials
Transcriptome (scRNA-seq data)
Chromatin accessibility (scATAC-seq data)
Multiome (scRNA-seq + scATAC-seq data)
Spatial transcriptome (Stereo-seq)
Spatial transcriptome (VisiumHD)
Spatial transcriptome (Xenium)
Spatial transcriptome (Xenium Prime)
Integration (iRECODE)
API Reference
RECODE
Tutorials
View page source
Tutorials
Transcriptome (scRNA-seq data)
Apply RECODE
Downstream analysis based on scanpy
Clustering
Find marker genes
Chromatin accessibility (scATAC-seq data)
Apply RECODE
Performance verification
Multiome (scRNA-seq + scATAC-seq data)
Apply RECODE
Performance verification
Spatial transcriptome (Stereo-seq)
Apply RECODE
Spatial transcriptome (VisiumHD)
Apply RECODE
Spatial transcriptome (Xenium)
Apply RECODE
Spatial transcriptome (Xenium Prime)
Apply RECODE
Integration (iRECODE)
Apply iRECODE
Downstream analysis
Adjust parameters of batch correction