Tutorials

• Transcriptome (scRNA-seq data)
  • Apply RECODE
  • Downstream analysis based on scanpy
  • Clustering
  • Find marker genes
• Transcriptome (scRNA-seq data) + HVG selection
  • Apply RECODE
  • Highly variable gene selection using RECODE
  • Downstream analysis based on scanpy
  • Clustering
  • Finding marker genes
• Chromatin accessibility (scATAC-seq data)
  • Apply RECODE
  • Performance verification
• Multiome (scRNA-seq + scATAC-seq data)
  • Apply RECODE
  • Performance verification
• Spatial transcriptome (Stereo-seq)
  • Apply RECODE
• Spatial transcriptome (VisiumHD)
  • Apply RECODE
• Spatial transcriptome (Xenium)
  • Apply RECODE
• Spatial transcriptome (Xenium Prime)
  • Apply RECODE
• Integration (iRECODE)
  • Apply iRECODE
  • Downstream analysis
  • Adjust parameters of batch correction