RECODE

Contents:

  • Tutorials
    • Transcriptome (scRNA-seq data)
    • Chromatin accessibility (scATAC-seq data)
    • Multiome (scRNA-seq + scATAC-seq data)
    • Spatial transcriptome (Stereo-seq)
    • Spatial transcriptome (VisiumHD)
    • Spatial transcriptome (Xenium)
    • Spatial transcriptome (Xenium Prime)
    • Integration (iRECODE)
  • API Reference
RECODE
  • Tutorials
  • View page source

Tutorials

  • Transcriptome (scRNA-seq data)
    • Apply RECODE
    • Downstream analysis based on scanpy
    • Clustering
    • Find marker genes
  • Chromatin accessibility (scATAC-seq data)
    • Apply RECODE
    • Performance verification
  • Multiome (scRNA-seq + scATAC-seq data)
    • Apply RECODE
    • Performance verification
  • Spatial transcriptome (Stereo-seq)
    • Apply RECODE
  • Spatial transcriptome (VisiumHD)
    • Apply RECODE
  • Spatial transcriptome (Xenium)
    • Apply RECODE
  • Spatial transcriptome (Xenium Prime)
    • Apply RECODE
  • Integration (iRECODE)
    • Apply iRECODE
    • Downstream analysis
    • Adjust parameters of batch correction
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© Copyright 2021, Yusuke Imoto.

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